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Firefox doesn't have an app mode - now I've come to the dark side...
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TOIlet, upstream is at https://github.com/cacalabs/toilet/
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Upstream is at https://bitbucket.org/blais/beancount
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Split JPEG Multi-Picture Format (MPO) images into simple JPG files
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Upstream is at https://github.com/Depado/goploader
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Simple Password Hasher for .htpasswd (md5-apr1 Style)
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A simple, personal OpenID provider written in PHP http://simpleid.koinic.net/, upstream is at https://github.com/simpleid/simpleid
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Axolotl C Library. Upstream is at https://github.com/WhisperSystems/libaxolotl-c
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FeedReader is a client for popular RSS-Web-Services such as TinyTinyRSS, ownCloud News or feedly. Upstream is at https://launchpad.net/feedreader
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Debian packaging info for Maya Calendar, upstream is at https://code.launchpad.net/~elementary-os/maya/deb-packaging
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Calendar from elementary OS, upstream is at https://launchpad.net/maya
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uBlock Origin Upstream is at https://github.com/gorhill/uBlock
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Source code mirror of http://www.freefilesync.org/
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Mirror of kpcli releases available from http://sourceforge.net/projects/kpcli/files/
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Duply is a shell front end for the duplicity backup tool http://duplicity.nongnu.org/. Upstream is at http://sourceforge.net/projects/ftplicity (http://www.duply.net/)
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fatrace reports file access events from all running processes. Upstream is at https://launchpad.net/fatrace